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Release Updates

BovineMine v1.4 Release


Features

  • Genomic Region Search Tool now support input regions with GK000001.2, Chr1 and AC_000158.1 as chromosome names
  • GO Annotations now display ECO terms as evidence codes
  • QTLs are now linked with their relevant ontologies, as provided from AnimalQTLdb
  • QTLs are now linked to SNPs that represent flanking markers

Datasets

  • Ensembl annotations updated to Release 89
  • EnsemblCompara updated to Release 89
  • QTLs from AnimalQTLdb updated to release 33
  • NCBI dbVar updated to revision May 2017
  • OrthoDB updated to v9.1
  • TreeFam updated to release 9.0
  • UniProt updated to 08/2017
  • BioGRID updated to version 3.4.151
  • IntAct updated to 2017-06-03 release
  • InterPro updated to version 64
  • Reactome updated to version 60
  • Gene Ontology Annotation updated
  • Uber Anatomy Ontology (UBERON)
  • Mouse Adult Gross Anatomy Ontology
  • Clinical Measurement Ontology
  • Livestock Breed Ontology
  • Livestock Product Trait Ontology
  • Vertebrate Trait Ontology
  • Vertebrate Trait Ontology


BovineMine v1.3 Release


Datasets

  • Ensembl annotations updated to Release 84
  • EnsemblCompara updated to Release 84
  • QTLs from AnimalQTLdb release 30
  • NCBI dbVar updated to revision January 2016
  • UniProt updated to 12/2016
  • Gene Ontology Annotation updated
  • OrthoDB updated to v9.0
  • InterPro updated to version 60
  • BioGRID updated to version 3.4.144
  • Reactome updated to version 59


BovineMine v1.2 Release


Features

  • Added support for genome, gene annotations and protein annotations for Goat (Capra hircus)
  • Added support for genome, gene annotations and protein annotations for Sheep (Ovis aries)

Datasets

  • NCBI annotations for Bos taurus updated to Release 105
  • Ensembl annotations updated to Release 84
  • EnsemblCompara updated to Release 84
  • QTLs from AnimalQTLdb release 28
  • NCBI dbSNP updated to v146
  • NCBI dbVar updated to revision January 2016
  • UniProt updated to 04/2016
  • Gene Ontology Annotation updated
  • InterPro updated to version 56.0
  • BioGRID updated to version 3.4.135
  • Reactome updated to version 55